Supplementary Table S1: Descriptive and diversity parameters of each simulated dataset. Page 2
descargar 2.55 Mb.
|
| 25 | |
| Dehalococcoides sp. BAV1 | 24 |
| Burkholderia cenocepacia HI2424 chromosome 3 | 24 |
| Burkholderia cenocepacia AU 1054 chromosome 3 | 24 |
| Chlamydophila pneumoniae CWL029 | 24 |
| Methylobacterium extorquens AM1 megaplasmid | 24 |
| Anaplasma marginale str. St. Maries | 24 |
| Dehalococcoides sp. CBDB1 chromosome | 23 |
| Bartonella bacilliformis KC583 | 23 |
| Ralstonia pickettii 12J chromosome 2 | 23 |
| Rickettsia prowazekii str. Madrid E chromosome | 23 |
| Mycoplasma crocodyli MP145 chromosome | 23 |
| Brucella melitensis bv. 1 str. 16M chromosome chromosome II | 23 |
| Eubacterium eligens ATCC 27750 plasmid unnamed | 22 |
| Mycoplasma capricolum subsp. capricolum ATCC 27343 | 22 |
| Rhodobacter sphaeroides 2.4.1 chromosome 2 | 22 |
| Rickettsia felis URRWXCal2 | 22 |
| Mycoplasma agalactiae PG2 | 22 |
| Wolbachia endosymbiont of Drosophila melanogaster | 22 |
| Mycoplasma hyopneumoniae 7448 | 22 |
| Paracoccus denitrificans PD1222 plasmid 1 | 21 |
| Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12 | 21 |
| Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid pNDAS01 | 21 |
| Mycoplasma pulmonis UAB CTIP | 21 |
| Candidatus Blochmannia pennsylvanicus str. BPEN | 21 |
| Candidatus Phytoplasma australiense | 21 |
| Rickettsia akari str. Hartford | 20 |
| Treponema pallidum subsp. pallidum str. Nichols chromosome | 20 |
| Burkholderia cenocepacia J2315 chromosome chromosome 3 | 20 |
| Desulfurococcus kamchatkensis 1221n chromosome | 20 |
| Neorickettsia risticii str. Illinois | 20 |
| Mycoplasma mobile 163K | 20 |
| Rhizobium etli CIAT 652 plasmid pC | 20 |
| Anaplasma marginale str. Florida | 20 |
| Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome | 19 |
| Treponema pallidum subsp. pallidum SS14 | 19 |
| Chlamydophila caviae GPIC | 19 |
| Aliivibrio salmonicida LFI1238 chromosome 2 | 19 |
| Borrelia turicatae 91E135 chromosome | 19 |
| Borrelia garinii PBi chromosome chromosome linear | 19 |
| Mycoplasma hyopneumoniae J | 19 |
| Methylobacterium nodulans ORS 2060 plasmid pMNOD01 | 19 |
| Azospirillum sp. B510 plasmid pAB510b | 19 |
| Tropheryma whipplei str. Twist | 18 |
| Borrelia recurrentis A1 | 18 |
| Burkholderia phymatum STM815 plasmid pBPHY02 | 18 |
| Thermomicrobium roseum DSM 5159 plasmid unnamed | 18 |
| Brucella melitensis biovar Abortus 2308 chromosome II | 18 |
| Ureaplasma parvum serovar 3 str. ATCC 700970 | 18 |
| Borrelia duttonii Ly | 18 |
| Sphaerobacter thermophilus DSM 20745 chromosome 2 | 17 |
| Wolbachia endosymbiont strain TRS of Brugia malayi | 17 |
| Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503 | 17 |
| Mycoplasma genitalium G37 | 17 |
| Mycoplasma synoviae 53 | 16 |
| Borrelia hermsii DAH chromosome | 16 |
| Rhizobium etli CFN 42 plasmid p42f | 16 |
| Nostoc sp. PCC 7120 plasmid pCC7120alpha | 15 |
| Cupriavidus taiwanensis plasmid pRALTA | 15 |
| Ruegeria sp. TM1040 mega plasmid | 15 |
| Methylibium petroleiphilum PM1 plasmid RPME01 | 15 |
| Arthrobacter chlorophenolicus A6 plasmid pACHL01 | 15 |
| Blattabacterium sp. (Blattella germanica) str. Bge | 15 |
| Candidatus Phytoplasma mali | 15 |
| Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01 | 15 |
| Agrobacterium vitis S4 plasmid pAtS4e | 14 |
| Neorickettsia sennetsu str. Miyayama | 14 |
| Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502 | 14 |
| Agrobacterium tumefaciens str. C58 plasmid At | 14 |
| Cyanothece sp. PCC 7822 plasmid Cy782201 | 14 |
| Pseudomonas fluorescens SBW25 plasmid pQBR103 | 13 |
| Halorubrum lacusprofundi ATCC 49239 chromosome 2 | 13 |
| Borrelia afzelii PKo | 13 |
| Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11 | 13 |
| Borrelia burgdorferi ZS7 | 13 |
| Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202 | 13 |
| Mycoplasma pneumoniae M129 | 12 |
| Mycobacterium sp. KMS plasmid pMKMS01 | 12 |
| Mycoplasma hyopneumoniae 232 | 12 |
| Haloferax volcanii DS2 plasmid pHV4 | 12 |
| Haloferax volcanii DS2 plasmid pHV3 | 12 |
| Methylobacterium nodulans ORS 2060 plasmid pMNOD02 | 12 |
| Rhizobium etli CFN 42 plasmid p42e | 12 |
| Rhizobium sp. NGR234 plasmid pNGR234a | 12 |
| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis chromosome | 12 |
| Rhizobium etli CFN 42 symbiotic plasmid p42d | 11 |
| Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01 | 11 |
| Cyanothece sp. PCC 7822 plasmid Cy782202 | 11 |
| Anabaena variabilis ATCC 29413 plasmid C | 11 |
| Rhodococcus jostii RHA1 plasmid pRHL2 | 11 |
| Ralstonia eutropha JMP134 megaplasmid | 11 |
| Acaryochloris marina MBIC11017 plasmid pREB1 | 11 |
| Candidatus Riesia pediculicola USDA chromosome | 11 |
| Mesoplasma florum L1 | 10 |
| Bacillus cereus AH187 plasmid pAH187_270 | 10 |
| Clostridium botulinum B1 str. Okra plasmid pCLD | 10 |
| Meiothermus silvanus DSM 9946 plasmid pMESIL01 | 10 |
| Azospirillum sp. B510 plasmid pAB510c | 10 |
| Bacillus weihenstephanensis KBAB4 plasmid pBWB401 | 10 |
| Xanthobacter autotrophicus Py2 plasmid pXAUT01 | 10 |
| Agrobacterium radiobacter K84 plasmid pAtK84b | 10 |
| NC_001318 Borrelia burgdorferi B31 chromosome | 10 |
| Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01 | 10 |
| Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501 | 10 |
| Acaryochloris marina MBIC11017 plasmid pREB2 | 10 |
| Haloarcula marismortui ATCC 43049 plasmid pNG700 | 9 |
| Sphingomonas wittichii RW1 plasmid pSWIT01 | 9 |
| Bacillus cereus E33L plasmid pE33L466 | 9 |
| Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01 | 9 |
| Rhizobium etli CIAT 652 plasmid pB | 9 |
| Nocardioides sp. JS614 plasmid pNOCA01 | 9 |
| Butyrivibrio proteoclasticus B316 plasmid pCY360 | 9 |
| Rhodococcus jostii RHA1 plasmid pRHL3 | 9 |
| Mesorhizobium loti MAFF303099 plasmid pMLa | 9 |
| Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02 | 9 |
| Arthrobacter aurescens TC1 plasmid TC1 | 9 |
| Cyanothece sp. PCC 7424 plasmid pP742401 | 8 |
| Anabaena variabilis ATCC 29413 plasmid A | 8 |
| Thermus thermophilus HB27 plasmid pTT27 | 8 |
| Mycobacterium sp. MCS plasmid1 | 8 |
| Rhodococcus erythropolis PR4 plasmid pREL1 | 8 |
| Nitrobacter hamburgensis X14 plasmid 2 | 8 |
| Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9 | 8 |
| Clostridium botulinum Ba4 str. 657 plasmid pCLJ | 8 |
| Azospirillum sp. B510 plasmid pAB510e | 8 |
| Ralstonia pickettii 12D plasmid pRp12D01 | 8 |
| Caulobacter sp. K31 plasmid pCAUL01 | 8 |
| Polaromonas naphthalenivorans CJ2 plasmid pPNAP01 | 8 |
| Pseudoalteromonas haloplanktis TAC125 chromosome II | 8 |
| Ralstonia pickettii 12D plasmid pRp12D02 | 8 |
| Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10 | 8 |
| Azospirillum sp. B510 plasmid pAB510d | 8 |
| Candidatus Blochmannia floridanus chromosome | 8 |
| Deinococcus geothermalis DSM 11300 plasmid pDGEO02 | 8 |
| Haloarcula marismortui ATCC 43049 chromosome II | 8 |
| Rhizobium etli CIAT 652 plasmid pA | 7 |
| Burkholderia vietnamiensis G4 plasmid pBVIE01 | 7 |
| Nostoc punctiforme PCC 73102 plasmid pNPUN01 | 7 |
| Shigella sonnei Ss046 plasmid pSS_046 | 7 |
| Nitrobacter hamburgensis X14 plasmid 1 | 7 |
| Deinococcus geothermalis DSM 11300 plasmid pDGEO01 | 7 |
| Methylobacterium chloromethanicum CM4 plasmid pMCHL01 | 7 |
| Cyanothece sp. ATCC 51142 chromosome chromosome linear | 7 |
| Dinoroseobacter shibae DFL 12 plasmid pDSHI03 | 7 |
| Cyanothece sp. PCC 7425 plasmid pP742501 | 7 |
| Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01 | 7 |
| Cupriavidus necator megaplasmid pHG1 | 7 |
| Marinobacter aquaeolei VT8 plasmid pMAQU01 | 6 |
| Bacillus pseudofirmus OF4 plasmid pBpOF4-01 | 6 |
| Polaromonas sp. JS666 plasmid 1 | 6 |
| Spirosoma linguale DSM 74 plasmid pSLIN02 | 6 |
| Polaromonas sp. JS666 plasmid 2 | 6 |
| Bacillus cereus G9842 plasmid pG9842_209 | 6 |
| Cupriavidus metallidurans CH34 plasmid pMOL30 | 6 |
| Phenylobacterium zucineum HLK1 plasmid unnamed | 6 |
| Acaryochloris marina MBIC11017 plasmid pREB4 | 6 |
| Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505 | 6 |
| Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03 | 6 |
| Acaryochloris marina MBIC11017 plasmid pREB7 | 6 |
| Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203 | 6 |
| Thermus thermophilus HB8 plasmid pTT27 | 6 |
| Burkholderia vietnamiensis G4 plasmid pBVIE02 | 6 |
| Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504 | 6 |
| Acaryochloris marina MBIC11017 plasmid pREB8 | 5 |
| Burkholderia multivorans ATCC 17616 plasmid pBMUL01 | 5 |
| Acaryochloris marina MBIC11017 plasmid pREB6 | 5 |
| Mesorhizobium sp. BNC1 plasmid 1 | 5 |
| Ochrobactrum anthropi ATCC 49188 plasmid pOANT01 | 5 |
| Acaryochloris marina MBIC11017 plasmid pREB3 | 5 |
| Burkholderia phytofirmans PsJN plasmid pBPHYT01 | 5 |
| Natronomonas pharaonis DSM 2160 plasmid PL131 | 5 |
| Azoarcus sp. EbN1 plasmid 1 | 5 |
| Candidatus Carsonella ruddii PV | 5 |
| Leptospira interrogans serovar Lai str. 56601 chromosome chromosome II | 5 |
| Cyanothece sp. PCC 7822 plasmid Cy782203 | 5 |
| Nocardia farcinica IFM 10152 plasmid pNF1 | 5 |
| Azoarcus sp. EbN1 plasmid 2 | 5 |
| Nitrobacter hamburgensis X14 plasmid 3 | 5 |
| Clostridium botulinum A3 str. Loch Maree plasmid pCLK | 5 |
| Roseobacter denitrificans plasmid pTB2 | 5 |
| Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1 | 5 |
| Dinoroseobacter shibae DFL 12 plasmid pDSHI02 | 5 |
| Clostridium acetobutylicum ATCC 824 plasmid pSOL1 | 5 |
| Synechocystis sp. PCC 6803 plasmid pSYSX | 5 |
| Azospirillum sp. B510 plasmid pAB510f | 5 |
| Mycobacterium ulcerans AGY99 plasmid pMUM001 | 5 |
| Borrelia garinii pBi plasmid | 5 |
| Bacillus cereus AH820 plasmid pAH820_272 | 5 |
| Nostoc punctiforme PCC 73102 plasmid pNPUN02 | 5 |
| Borrelia duttonii Ly plasmid pl165 | 5 |
| Nostoc sp. PCC 7120 plasmid pCC7120beta | 5 |
| Arthrobacter sp. FB24 plasmid 2 | 4 |
| Halomicrobium mukohataei DSM 12286 plasmid pHmuk01 | 4 |
| Deinococcus radiodurans R1 chromosome 2 | 4 |
| Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A | 4 |
| Shewanella baltica OS195 plasmid pS19503 | 4 |
| Halobacterium salinarum R1 plasmid PHS3 | 4 |
| Mycobacterium sp. KMS plasmid pMKMS02 | 4 |
| Pseudomonas syringae pv. phaseolicola 1448A large plasmid | 4 |
| Marinobacter aquaeolei VT8 plasmid pMAQU02 | 4 |
| Meiothermus silvanus DSM 9946 plasmid pMESIL02 | 4 |
| Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7 | 4 |
| Geobacter lovleyi SZ plasmid pGLOV01 | 4 |
| Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02 | 4 |
| Butyrivibrio proteoclasticus B316 plasmid pCY186 | 4 |
| Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204 | 4 |
| Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p | 4 |
| Mesorhizobium loti MAFF303099 plasmid pMLb | 4 |
| Agrobacterium vitis S4 plasmid pAtS4c | 4 |
| Rhodobacter sphaeroides 2.4.1 plasmid B | 4 |
| Rhodobacter sphaeroides 2.4.1 plasmid A | 4 |
| Cyanothece sp. PCC 7425 plasmid pP742502 | 4 |
| Burkholderia multivorans ATCC 17616 plasmid pTGL1 | 4 |
| Shigella flexneri 2a str. 301 plasmid pCP301 | 4 |
| Enterobacter sp. 638 plasmid pENTE01 | 4 |
| Yersinia pestis Angola plasmid pMT-pPCP | 4 |
| Candidatus Sulcia muelleri GWSS | 4 |
| Yersinia pestis Antiqua plasmid pCD | 4 |
| Yersinia pestis biovar Microtus str. 91001 plasmid pCD1 | 4 |
| Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM | 4 |
| Anaerococcus prevotii DSM 20548 plasmid pAPRE01 | 4 |
| Agrobacterium radiobacter K84 plasmid pAtK84c | 4 |
| Sinorhizobium medicae WSM419 plasmid pSMED03 | 4 |
| Caulobacter sp. K31 plasmid pCAUL02 | 4 |
| Burkholderia cepacia AMMD plasmid 1 | 4 |
| Agrobacterium vitis S4 plasmid pAtS4a | 4 |
| Sphingomonas wittichii RW1 plasmid pSWIT02 | 4 |
| Gluconobacter oxydans 621H plasmid pGOX1 | 4 |
| Burkholderia vietnamiensis G4 plasmid pBVIE03 | 3 |
| Rhizobium etli CFN 42 plasmid p42b | 3 |
| Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02 | 3 |
| Leuconostoc citreum KM20 plasmid pLCK2 | 3 |
| Acaryochloris marina MBIC11017 plasmid pREB5 | 3 |
| Enterococcus faecalis V583 plasmid pTEF1 | 3 |
| Pelobacter propionicus DSM 2379 plasmid pPRO1 | 3 |
| Cyanothece sp. PCC 7424 plasmid pP742402 | 3 |
| Shigella boydii Sb227 plasmid pSB4_227 | 3 |
| Vibrio fischeri MJ11 plasmid pMJ100 | 3 |
| Ochrobactrum anthropi ATCC 49188 plasmid pOANT04 | 3 |
| Deinococcus radiodurans R1 plasmid MP1 | 3 |
| Anabaena variabilis ATCC 29413 incision element | 3 |
| Acinetobacter baumannii ACICU plasmid pACICU2 | 3 |
| Aliivibrio salmonicida LFI1238 plasmid pVSAL840 | 3 |
| Arthrobacter chlorophenolicus A6 plasmid pACHL02 | 3 |
| Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSN254 | 3 |
| Lactobacillus salivarius UCC118 plasmid pMP118 | 3 |
| Polaromonas naphthalenivorans CJ2 plasmid pPNAP04 | 3 |
| Rhodoferax ferrireducens T118 plasmid1 | 3 |
| Haloarcula marismortui ATCC 43049 plasmid pNG600 | 3 |
| Legionella pneumophila str. Paris plasmid pLPP | 3 |
| Haloarcula marismortui ATCC 43049 plasmid pNG500 | 3 |
| Polaromonas naphthalenivorans CJ2 plasmid pPNAP03 | 3 |
| Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-06 | 3 |
| Yersinia pseudotuberculosis IP 32953 plasmid pYV | 3 |
| Yersinia pseudotuberculosis IP 31758 plasmid_153kb | 3 |
| Agrobacterium vitis S4 plasmid pAtS4b | 3 |
| Klebsiella pneumoniae 342 plasmid pKP187 | 3 |
| Anabaena variabilis ATCC 29413 plasmid B | 3 |
| Dinoroseobacter shibae DFL 12 plasmid pDSHI01 | 3 |
| Shewanella baltica OS195 plasmid pS19502 | 3 |
| Escherichia coli APEC O1 plasmid pAPEC-O1-R | 3 |
| Shewanella baltica OS155 plasmid pSbal02 | 3 |
| Novosphingobium aromaticivorans DSM 12444 plasmid pNL2 | 3 |
| Novosphingobium aromaticivorans DSM 12444 plasmid pNL1 | 3 |
| Bradyrhizobium sp. BTAi1 plasmid pBBta01 | 3 |
| Nostoc sp. PCC 7120 plasmid pCC7120gamma | 3 |
| Dinoroseobacter shibae DFL 12 plasmid pDSHI05 | 3 |
| Ruegeria sp. TM1040 plasmid unnamed | 3 |
| Kineococcus radiotolerans SRS30216 plasmid pKRAD01 | 3 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3 | 3 |
| Agrobacterium vitis S4 plasmid pTiS4 | 3 |
| Bacillus cereus G9842 plasmid pG9842_140 | 3 |
| Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081 | 3 |
| Bacillus cereus Q1 plasmid pBc239 | 3 |
| Cyanothece sp. PCC 7822 plasmid Cy782205 | 3 |
| Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01 | 3 |
| Borrelia burgdorferi B31 plasmid cp32-1 | 3 |
| Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8 | 3 |
| Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B | 3 |
| Finegoldia magna ATCC 29328 plasmid pFMC | 2 |
| Dinoroseobacter shibae DFL 12 plasmid pDSHI04 | 2 |
| Polaromonas naphthalenivorans CJ2 plasmid pPNAP05 | 2 |
| Macrococcus caseolyticus JCSC5402 plasmid pMCCL1 | 2 |
| Shewanella baltica OS223 plasmid pS22302 | 2 |
| Shigella dysenteriae Sd197 plasmid pSD1_197 | 2 |
| Yersinia pseudotuberculosis IP 31758 plasmid_59kb | 2 |
| Macrococcus caseolyticus JCSC5402 plasmid pMCCL2 | 2 |
| Acinetobacter baumannii AYE plasmid p3ABAYE | 2 |
| Gordonia bronchialis DSM 43247 plasmid pGBRO01 | 2 |
| Bacillus weihenstephanensis KBAB4 plasmid pBWB402 | 2 |
| Borrelia burgdorferi B31 plasmid cp32-6 | 2 |
| Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01 | 2 |
| Nocardia farcinica IFM 10152 plasmid pNF2 | 2 |
| Listeria innocua Clip11262 plasmid pLI100 | 2 |
| Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI01 | 2 |
| Rhizobium etli CFN 42 plasmid p42c | 2 |
| Photobacterium profundum SS9 plasmid pPBPR1 | 2 |
| Methylobacterium radiotolerans JCM 2831 plasmid pMRAD07 | 2 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5 | 2 |
| Mesorhizobium sp. BNC1 plasmid 2 | 2 |
| Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA04 | 2 |
| Rhodospirillum rubrum ATCC 11170 plasmid unnamed | 2 |
| Desulfotalea psychrophila LSv54 plasmid large | 2 |
| Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1 | 2 |
| Cyanothece sp. PCC 8801 plasmid pP880103 | 2 |
| Synechococcus sp. PCC 7002 plasmid pAQ7 | 2 |
| Staphylococcus aureus subsp. aureus JH9 plasmid pSJH901 | 2 |
| Deinococcus radiodurans R1 plasmid CP1 | 2 |
| Yersinia pestis Angola plasmid new_pCD | 2 |
| Rickettsia felis URRWXCal2 plasmid pRF | 2 |
| Aeromonas salmonicida subsp. salmonicida A449 plasmid 5 | 2 |
| Rhodobacter sphaeroides 2.4.1 plasmid D | 2 |
| Yersinia pestis Pestoides F plasmid MT | 2 |
| Nitrosomonas eutropha C91 plasmid1 | 2 |
| Edwardsiella tarda EIB202 plasmid pEIB202 | 2 |
| Yersinia pestis Nepal516 plasmid pMT | 2 |
| Desulfohalobium retbaense DSM 5692 plasmid pDRET01 | 2 |
| Synechocystis sp. PCC 6803 plasmid pSYSA | 2 |
| Synechocystis sp. PCC 6803 plasmid pSYSM | 2 |
| Synechococcus sp. PCC 7002 plasmid pAQ6 | 2 |
| Yersinia pestis biovar Microtus str. 91001 plasmid pCRY | 2 |
| Psychrobacter cryohalolentis K5 plasmid 1 | 2 |
| Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74 | 2 |
| Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_110 | 2 |
| Aliivibrio salmonicida LFI1238 plasmid pVSAL54 | 2 |
| Agrobacterium tumefaciens str. C58 plasmid Ti | 2 |
| Clostridium tetani E88 plasmid pE88 | 2 |
| Yersinia pestis Pestoides F plasmid CD | 2 |
| Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp | 2 |
| Escherichia coli UTI89 plasmid pUTI89 | 2 |
| Yersinia pestis Antiqua plasmid pMT | 2 |
| Yersinia pestis CO92 plasmid pMT1 | 2 |
| Ammonifex degensii KC4 plasmid pADEG01 | 2 |
| Escherichia coli E24377A plasmid pETEC_73 | 2 |
| Roseobacter denitrificans plasmid pTB1 | 2 |
| Synechococcus sp. PCC 7002 plasmid pAQ4 | 2 |
| Nostoc punctiforme PCC 73102 plasmid pNPUN03 | 2 |
| Arthrobacter sp. FB24 plasmid 1 | 2 |
| Arthrobacter sp. FB24 plasmid 3 | 2 |
| Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2 | 2 |
| Burkholderia cenocepacia HI2424 plasmid 1 | 2 |
| Cupriavidus metallidurans CH34 plasmid pMOL28 | 1 |
| Escherichia coli E24377A plasmid pETEC_35 | 1 |
| Polaromonas naphthalenivorans CJ2 plasmid pPNAP06 | 1 |
| Thiomonas intermedia K12 plasmid pTINT02 | 1 |
| Pseudomonas syringae pv. phaseolicola 1448A small plasmid | 1 |
| Polaromonas naphthalenivorans CJ2 plasmid pPNAP02 | 1 |
| Rhodobacter capsulatus SB 1003 plasmid pRCB133 | 1 |
| Halobacterium salinarum R1 plasmid PHS2 | 1 |
| Natronomonas pharaonis DSM 2160 plasmid PL23 | 1 |
| Sulfolobus islandicus L.D.8.5 plasmid pLD8501 | 1 |
| Sulfolobus islandicus Y.N.15.51 plasmid pYN01 | 1 |
| Gluconobacter oxydans 621H plasmid pGOX4 | 1 |
| Vibrio vulnificus YJ016 plasmid pYJ016 | 1 |
| Gluconacetobacter diazotrophicus PAl 5 plasmid pGDIA01 | 1 |
| Burkholderia cenocepacia J2315 plasmid pBCJ2315 | 1 |
| Campylobacter lari RM2100 megaplasmid pCL2100 | 1 |
| Desulfobacterium autotrophicum HRM2 plasmid pHRM2a | 1 |
| Rickettsia felis URRWXCal2 plasmid pRFdelta | 1 |
| Aeromonas salmonicida salmonicida A449 plasmid pAsa2 | 1 |
| Aeromonas salmonicida subsp. salmonicida A449 plasmid 4 | 1 |
| Thermofilum pendens Hrk 5 plasmid pTPEN01 | 1 |
| Candidatus Riesia pediculicola USDA plasmid pPAN | 1 |
| Rhodobacter sphaeroides 2.4.1 plasmid E | 1 |
| Rhodobacter sphaeroides 2.4.1 plasmid C | 1 |
| Desulfovibrio vulgaris str. Hildenborough plasmid pDV | 1 |
| Haloarcula marismortui ATCC 43049 plasmid pNG100 | 1 |
| Methylobacterium nodulans ORS 2060 plasmid pMNOD07 | 1 |
| Ralstonia pickettii 12J plasmid pRPIC01 | 1 |
| Methanocaldococcus jannaschii DSM 2661 plasmid large ECE | 1 |
| Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND02 | 1 |
| Ochrobactrum anthropi ATCC 49188 plasmid pOANT03 | 1 |
| Ralstonia pickettii 12D plasmid pRp12D03 | 1 |
| Roseobacter denitrificans plasmid pTB3 | 1 |
| Ochrobactrum anthropi ATCC 49188 plasmid pOANT02 | 1 |
| Methanothermobacter marburgensis str. Marburg plasmid pMTBMA4 | 1 |
| Klebsiella pneumoniae 342 plasmid pKP91 | 1 |
| Methylobacterium extorquens AM1 plasmid p3META1 | 1 |
| Halobacterium salinarum R1 plasmid PHS4 | 1 |
| Burkholderia vietnamiensis G4 plasmid pBVIE05 | 1 |
| Haloferax volcanii DS2 plasmid pHV1 | 1 |
| Methylobacterium chloromethanicum CM4 plasmid pMCHL02 | 1 |
| Halobacterium salinarum R1 plasmid PHS1 | 1 |
| Methylobacterium radiotolerans JCM 2831 plasmid pMRAD05 | 1 |
| Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08 | 1 |
| Ralstonia eutropha JMP134 plasmid 1 | 1 |
| Bacillus cereus E33L plasmid pE33L54 | 1 |
| Borrelia duttonii Ly plasmid pl40 | 1 |
| Borrelia duttonii Ly plasmid pl42 | 1 |
| Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC64 | 1 |
| Cyanothece sp. PCC 8802 plasmid pP880204 | 1 |
| Borrelia duttonii Ly plasmid pl36 | 1 |
| Borrelia duttonii Ly plasmid pl32 | 1 |
| Borrelia duttonii Ly plasmid pl23 | 1 |
| Borrelia duttonii Ly plasmid pl23b | 1 |
| Borrelia duttonii Ly plasmid pl26 | 1 |
| Borrelia duttonii Ly plasmid pl31 | 1 |
| Agrobacterium radiobacter K84 plasmid pAgK84 | 1 |
| Cyanothece sp. PCC 7424 plasmid pP742405 | 1 |
| Synechococcus sp. PCC 7002 plasmid pAQ5 | 1 |
| Coxiella burnetii RSA 331 plasmid QpH1 | 1 |
| Sebaldella termitidis ATCC 33386 plasmid pSTERM01 | 1 |
| Xylella fastidiosa M23 plasmid pXFAS01 | 1 |
| Cyanothece sp. PCC 8801 plasmid pP880101 | 1 |
| Cyanothece sp. ATCC 51142 plasmid A | 1 |
| Cyanothece sp. PCC 7424 plasmid pP742403 | 1 |
| Xylella fastidiosa 9a5c plasmid pXF51 | 1 |
| Cyanothece sp. ATCC 51142 plasmid C | 1 |
| Cyanothece sp. ATCC 51142 plasmid B | 1 |
| Borrelia recurrentis A1 plasmid pl53 | 1 |
| Borrelia recurrentis A1 plasmid pl35 | 1 |
| Borrelia burgdorferi B31 plasmid lp56 | 1 |
| Borrelia burgdorferi plasmid cp26 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_cp26 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_cp32-1 | 1 |
| Borrelia burgdorferi B31 plasmid lp28-2 | 1 |
| Borrelia burgdorferi B31 plasmid lp17 | 1 |
| Coxiella burnetii CbuK_Q154 plasmid pQpRS_K_Q154 | 1 |
| Nitrosococcus oceani ATCC 19707 plasmid A | 1 |
| Borrelia burgdorferi B31 plasmid cp32-3 | 1 |
| Borrelia burgdorferi B31 plasmid cp32-4 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_cp32-12 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_cp32-4 | 1 |
| Borrelia afzelii PKo plasmid lp60-2 | 1 |
| Nostoc sp. PCC 7120 plasmid pCC7120delta | 1 |
| Borrelia recurrentis A1 plasmid pl124 | 1 |
| Borrelia recurrentis A1 plasmid pl33 | 1 |
| Nostoc punctiforme PCC 73102 plasmid pNPUN04 | 1 |
| Borrelia garinii PBi plasmid lp54 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_lp17 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_lp25 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_lp28-4 | 1 |
| Borrelia burgdorferi ZS7 plasmid ZS7_lp54 | 1 |
| Aquifex aeolicus VF5 plasmid ece1 | 1 |
| Butyrivibrio proteoclasticus B316 chromosome 2 | 1 |
| Bacillus cereus ATCC 10987 plasmid pBc10987 | 1 |
| Yersinia pestis CO92 plasmid pCD1 | 1 |
| Kineococcus radiotolerans SRS30216 plasmid pKRAD02 | 1 |
| Macrococcus caseolyticus JCSC5402 plasmid pMCCL4 | 1 |
| Shewanella baltica OS155 plasmid pSbal01 | 1 |
| Yersinia pestis KIM plasmid pMT-1 | 1 |
| Bacillus cereus E33L plasmid pE33L9 | 1 |
| Bacillus cereus E33L plasmid pE33L8 | 1 |
| Tsukamurella paurometabola DSM 20162 plasmid pTpau01 | 1 |
| Shewanella baltica OS195 plasmid pS19501 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 plasmid pSSP1 | 1 |
| Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-04 | 1 |
| Bacteroides fragilis NCTC 9343 plasmid pBF9343 | 1 |
| Yersinia pestis biovar Microtus str. 91001 plasmid pMT1 | 1 |
| Spirosoma linguale DSM 74 plasmid pSLIN05 | 1 |
| Spirosoma linguale DSM 74 plasmid pSLIN01 | 1 |
| Yersinia pestis CO92 plasmid pPCP1 | 1 |
| Bifidobacterium longum NCC2705 plasmid pBLO1 | 1 |
| Staphylococcus epidermidis RP62A plasmid pSERP | 1 |
| Streptosporangium roseum DSM 43021 plasmid pSROS01 | 1 |
| Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid pUSA03 | 1 |
| Prosthecochloris aestuarii DSM 271 plasmid pPAES01 | 1 |
| Shewanella baltica OS223 plasmid pS22301 | 1 |
| Bacillus weihenstephanensis KBAB4 plasmid pBWB403 | 1 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2 | 1 |
| Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid unnamed | 1 |
| Clostridium botulinum B str. Eklund 17B plasmid pCLL | 1 |
| Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01 | 1 |
| Clostridium botulinum F str. Langeland plasmid pCLI | 1 |
| Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1 | 1 |
| Clostridium kluyveri DSM 555 plasmid pCKL555A | 1 |
| Arthrobacter aurescens TC1 plasmid TC2 | 1 |
| Clostridium difficile 630 plasmid pCD630 | 1 |
| Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 plasmid pSL476_91 | 1 |
| Salmonella typhimurium LT2 plasmid pSLT | 1 |
| Lactococcus lactis subsp. cremoris SK11 plasmid 4 | 1 |
| Lactobacillus plantarum WCFS1 plasmid pWCFS103 | 1 |
| Lactobacillus casei ATCC 334 plasmid 1 | 1 |
| Rhizobium etli CFN 42 plasmid p42a | 1 |
| Bacillus pseudofirmus OF4 plasmid pBpOF4-02 | 1 |
| Corynebacterium glutamicum R plasmid pCGR1 | 1 |
| Legionella pneumophila str. Lens plasmid pLPL | 1 |
| Rhodococcus erythropolis PR4 plasmid pREC1 | 1 |
| Lactobacillus brevis ATCC 367 plasmid 1 | 1 |
| Lactobacillus salivarius UCC118 plasmid pSF118-44 | 1 |
| Thauera sp. MZ1T plasmid pTha01 | 1 |
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