Supplementary Table S1: Descriptive and diversity parameters of each simulated dataset. Page 2




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títuloSupplementary Table S1: Descriptive and diversity parameters of each simulated dataset. Page 2
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25

Dehalococcoides sp. BAV1

24

Burkholderia cenocepacia HI2424 chromosome 3

24

Burkholderia cenocepacia AU 1054 chromosome 3

24

Chlamydophila pneumoniae CWL029

24

Methylobacterium extorquens AM1 megaplasmid

24

Anaplasma marginale str. St. Maries

24

Dehalococcoides sp. CBDB1 chromosome

23

Bartonella bacilliformis KC583

23

Ralstonia pickettii 12J chromosome 2

23

Rickettsia prowazekii str. Madrid E chromosome

23

Mycoplasma crocodyli MP145 chromosome

23

Brucella melitensis bv. 1 str. 16M chromosome chromosome II

23

Eubacterium eligens ATCC 27750 plasmid unnamed

22

Mycoplasma capricolum subsp. capricolum ATCC 27343

22

Rhodobacter sphaeroides 2.4.1 chromosome 2

22

Rickettsia felis URRWXCal2

22

Mycoplasma agalactiae PG2

22

Wolbachia endosymbiont of Drosophila melanogaster

22

Mycoplasma hyopneumoniae 7448

22

Paracoccus denitrificans PD1222 plasmid 1

21

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12

21

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid pNDAS01

21

Mycoplasma pulmonis UAB CTIP

21

Candidatus Blochmannia pennsylvanicus str. BPEN

21

Candidatus Phytoplasma australiense

21

Rickettsia akari str. Hartford

20

Treponema pallidum subsp. pallidum str. Nichols chromosome

20

Burkholderia cenocepacia J2315 chromosome chromosome 3

20

Desulfurococcus kamchatkensis 1221n chromosome

20

Neorickettsia risticii str. Illinois

20

Mycoplasma mobile 163K

20

Rhizobium etli CIAT 652 plasmid pC

20

Anaplasma marginale str. Florida

20

Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome

19

Treponema pallidum subsp. pallidum SS14

19

Chlamydophila caviae GPIC

19

Aliivibrio salmonicida LFI1238 chromosome 2

19

Borrelia turicatae 91E135 chromosome

19

Borrelia garinii PBi chromosome chromosome linear

19

Mycoplasma hyopneumoniae J

19

Methylobacterium nodulans ORS 2060 plasmid pMNOD01

19

Azospirillum sp. B510 plasmid pAB510b

19

Tropheryma whipplei str. Twist

18

Borrelia recurrentis A1

18

Burkholderia phymatum STM815 plasmid pBPHY02

18

Thermomicrobium roseum DSM 5159 plasmid unnamed

18

Brucella melitensis biovar Abortus 2308 chromosome II

18

Ureaplasma parvum serovar 3 str. ATCC 700970

18

Borrelia duttonii Ly

18

Sphaerobacter thermophilus DSM 20745 chromosome 2

17

Wolbachia endosymbiont strain TRS of Brugia malayi

17

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503

17

Mycoplasma genitalium G37

17

Mycoplasma synoviae 53

16

Borrelia hermsii DAH chromosome

16

Rhizobium etli CFN 42 plasmid p42f

16

Nostoc sp. PCC 7120 plasmid pCC7120alpha

15

Cupriavidus taiwanensis plasmid pRALTA

15

Ruegeria sp. TM1040 mega plasmid

15

Methylibium petroleiphilum PM1 plasmid RPME01

15

Arthrobacter chlorophenolicus A6 plasmid pACHL01

15

Blattabacterium sp. (Blattella germanica) str. Bge

15

Candidatus Phytoplasma mali

15

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01

15

Agrobacterium vitis S4 plasmid pAtS4e

14

Neorickettsia sennetsu str. Miyayama

14

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502

14

Agrobacterium tumefaciens str. C58 plasmid At

14

Cyanothece sp. PCC 7822 plasmid Cy782201

14

Pseudomonas fluorescens SBW25 plasmid pQBR103

13

Halorubrum lacusprofundi ATCC 49239 chromosome 2

13

Borrelia afzelii PKo

13

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11

13

Borrelia burgdorferi ZS7

13

Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202

13

Mycoplasma pneumoniae M129

12

Mycobacterium sp. KMS plasmid pMKMS01

12

Mycoplasma hyopneumoniae 232

12

Haloferax volcanii DS2 plasmid pHV4

12

Haloferax volcanii DS2 plasmid pHV3

12

Methylobacterium nodulans ORS 2060 plasmid pMNOD02

12

Rhizobium etli CFN 42 plasmid p42e

12

Rhizobium sp. NGR234 plasmid pNGR234a

12

Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis chromosome

12

Rhizobium etli CFN 42 symbiotic plasmid p42d

11

Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01

11

Cyanothece sp. PCC 7822 plasmid Cy782202

11

Anabaena variabilis ATCC 29413 plasmid C

11

Rhodococcus jostii RHA1 plasmid pRHL2

11

Ralstonia eutropha JMP134 megaplasmid

11

Acaryochloris marina MBIC11017 plasmid pREB1

11

Candidatus Riesia pediculicola USDA chromosome

11

Mesoplasma florum L1

10

Bacillus cereus AH187 plasmid pAH187_270

10

Clostridium botulinum B1 str. Okra plasmid pCLD

10

Meiothermus silvanus DSM 9946 plasmid pMESIL01

10

Azospirillum sp. B510 plasmid pAB510c

10

Bacillus weihenstephanensis KBAB4 plasmid pBWB401

10

Xanthobacter autotrophicus Py2 plasmid pXAUT01

10

Agrobacterium radiobacter K84 plasmid pAtK84b

10

NC_001318 Borrelia burgdorferi B31 chromosome

10

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01

10

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501

10

Acaryochloris marina MBIC11017 plasmid pREB2

10

Haloarcula marismortui ATCC 43049 plasmid pNG700

9

Sphingomonas wittichii RW1 plasmid pSWIT01

9

Bacillus cereus E33L plasmid pE33L466

9

Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01

9

Rhizobium etli CIAT 652 plasmid pB

9

Nocardioides sp. JS614 plasmid pNOCA01

9

Butyrivibrio proteoclasticus B316 plasmid pCY360

9

Rhodococcus jostii RHA1 plasmid pRHL3

9

Mesorhizobium loti MAFF303099 plasmid pMLa

9

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02

9

Arthrobacter aurescens TC1 plasmid TC1

9

Cyanothece sp. PCC 7424 plasmid pP742401

8

Anabaena variabilis ATCC 29413 plasmid A

8

Thermus thermophilus HB27 plasmid pTT27

8

Mycobacterium sp. MCS plasmid1

8

Rhodococcus erythropolis PR4 plasmid pREL1

8

Nitrobacter hamburgensis X14 plasmid 2

8

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9

8

Clostridium botulinum Ba4 str. 657 plasmid pCLJ

8

Azospirillum sp. B510 plasmid pAB510e

8

Ralstonia pickettii 12D plasmid pRp12D01

8

Caulobacter sp. K31 plasmid pCAUL01

8

Polaromonas naphthalenivorans CJ2 plasmid pPNAP01

8

Pseudoalteromonas haloplanktis TAC125 chromosome II

8

Ralstonia pickettii 12D plasmid pRp12D02

8

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10

8

Azospirillum sp. B510 plasmid pAB510d

8

Candidatus Blochmannia floridanus chromosome

8

Deinococcus geothermalis DSM 11300 plasmid pDGEO02

8

Haloarcula marismortui ATCC 43049 chromosome II

8

Rhizobium etli CIAT 652 plasmid pA

7

Burkholderia vietnamiensis G4 plasmid pBVIE01

7

Nostoc punctiforme PCC 73102 plasmid pNPUN01

7

Shigella sonnei Ss046 plasmid pSS_046

7

Nitrobacter hamburgensis X14 plasmid 1

7

Deinococcus geothermalis DSM 11300 plasmid pDGEO01

7

Methylobacterium chloromethanicum CM4 plasmid pMCHL01

7

Cyanothece sp. ATCC 51142 chromosome chromosome linear

7

Dinoroseobacter shibae DFL 12 plasmid pDSHI03

7

Cyanothece sp. PCC 7425 plasmid pP742501

7

Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01

7

Cupriavidus necator megaplasmid pHG1

7

Marinobacter aquaeolei VT8 plasmid pMAQU01

6

Bacillus pseudofirmus OF4 plasmid pBpOF4-01

6

Polaromonas sp. JS666 plasmid 1

6

Spirosoma linguale DSM 74 plasmid pSLIN02

6

Polaromonas sp. JS666 plasmid 2

6

Bacillus cereus G9842 plasmid pG9842_209

6

Cupriavidus metallidurans CH34 plasmid pMOL30

6

Phenylobacterium zucineum HLK1 plasmid unnamed

6

Acaryochloris marina MBIC11017 plasmid pREB4

6

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505

6

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03

6

Acaryochloris marina MBIC11017 plasmid pREB7

6

Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203

6

Thermus thermophilus HB8 plasmid pTT27

6

Burkholderia vietnamiensis G4 plasmid pBVIE02

6

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504

6

Acaryochloris marina MBIC11017 plasmid pREB8

5

Burkholderia multivorans ATCC 17616 plasmid pBMUL01

5

Acaryochloris marina MBIC11017 plasmid pREB6

5

Mesorhizobium sp. BNC1 plasmid 1

5

Ochrobactrum anthropi ATCC 49188 plasmid pOANT01

5

Acaryochloris marina MBIC11017 plasmid pREB3

5

Burkholderia phytofirmans PsJN plasmid pBPHYT01

5

Natronomonas pharaonis DSM 2160 plasmid PL131

5

Azoarcus sp. EbN1 plasmid 1

5

Candidatus Carsonella ruddii PV

5

Leptospira interrogans serovar Lai str. 56601 chromosome chromosome II

5

Cyanothece sp. PCC 7822 plasmid Cy782203

5

Nocardia farcinica IFM 10152 plasmid pNF1

5

Azoarcus sp. EbN1 plasmid 2

5

Nitrobacter hamburgensis X14 plasmid 3

5

Clostridium botulinum A3 str. Loch Maree plasmid pCLK

5

Roseobacter denitrificans plasmid pTB2

5

Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1

5

Dinoroseobacter shibae DFL 12 plasmid pDSHI02

5

Clostridium acetobutylicum ATCC 824 plasmid pSOL1

5

Synechocystis sp. PCC 6803 plasmid pSYSX

5

Azospirillum sp. B510 plasmid pAB510f

5

Mycobacterium ulcerans AGY99 plasmid pMUM001

5

Borrelia garinii pBi plasmid

5

Bacillus cereus AH820 plasmid pAH820_272

5

Nostoc punctiforme PCC 73102 plasmid pNPUN02

5

Borrelia duttonii Ly plasmid pl165

5

Nostoc sp. PCC 7120 plasmid pCC7120beta

5

Arthrobacter sp. FB24 plasmid 2

4

Halomicrobium mukohataei DSM 12286 plasmid pHmuk01

4

Deinococcus radiodurans R1 chromosome 2

4

Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A

4

Shewanella baltica OS195 plasmid pS19503

4

Halobacterium salinarum R1 plasmid PHS3

4

Mycobacterium sp. KMS plasmid pMKMS02

4

Pseudomonas syringae pv. phaseolicola 1448A large plasmid

4

Marinobacter aquaeolei VT8 plasmid pMAQU02

4

Meiothermus silvanus DSM 9946 plasmid pMESIL02

4

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7

4

Geobacter lovleyi SZ plasmid pGLOV01

4

Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02

4

Butyrivibrio proteoclasticus B316 plasmid pCY186

4

Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204

4

Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p

4

Mesorhizobium loti MAFF303099 plasmid pMLb

4

Agrobacterium vitis S4 plasmid pAtS4c

4

Rhodobacter sphaeroides 2.4.1 plasmid B

4

Rhodobacter sphaeroides 2.4.1 plasmid A

4

Cyanothece sp. PCC 7425 plasmid pP742502

4

Burkholderia multivorans ATCC 17616 plasmid pTGL1

4

Shigella flexneri 2a str. 301 plasmid pCP301

4

Enterobacter sp. 638 plasmid pENTE01

4

Yersinia pestis Angola plasmid pMT-pPCP

4

Candidatus Sulcia muelleri GWSS

4

Yersinia pestis Antiqua plasmid pCD

4

Yersinia pestis biovar Microtus str. 91001 plasmid pCD1

4

Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM

4

Anaerococcus prevotii DSM 20548 plasmid pAPRE01

4

Agrobacterium radiobacter K84 plasmid pAtK84c

4

Sinorhizobium medicae WSM419 plasmid pSMED03

4

Caulobacter sp. K31 plasmid pCAUL02

4

Burkholderia cepacia AMMD plasmid 1

4

Agrobacterium vitis S4 plasmid pAtS4a

4

Sphingomonas wittichii RW1 plasmid pSWIT02

4

Gluconobacter oxydans 621H plasmid pGOX1

4

Burkholderia vietnamiensis G4 plasmid pBVIE03

3

Rhizobium etli CFN 42 plasmid p42b

3

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02

3

Leuconostoc citreum KM20 plasmid pLCK2

3

Acaryochloris marina MBIC11017 plasmid pREB5

3

Enterococcus faecalis V583 plasmid pTEF1

3

Pelobacter propionicus DSM 2379 plasmid pPRO1

3

Cyanothece sp. PCC 7424 plasmid pP742402

3

Shigella boydii Sb227 plasmid pSB4_227

3

Vibrio fischeri MJ11 plasmid pMJ100

3

Ochrobactrum anthropi ATCC 49188 plasmid pOANT04

3

Deinococcus radiodurans R1 plasmid MP1

3

Anabaena variabilis ATCC 29413 incision element

3

Acinetobacter baumannii ACICU plasmid pACICU2

3

Aliivibrio salmonicida LFI1238 plasmid pVSAL840

3

Arthrobacter chlorophenolicus A6 plasmid pACHL02

3

Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSN254

3

Lactobacillus salivarius UCC118 plasmid pMP118

3

Polaromonas naphthalenivorans CJ2 plasmid pPNAP04

3

Rhodoferax ferrireducens T118 plasmid1

3

Haloarcula marismortui ATCC 43049 plasmid pNG600

3

Legionella pneumophila str. Paris plasmid pLPP

3

Haloarcula marismortui ATCC 43049 plasmid pNG500

3

Polaromonas naphthalenivorans CJ2 plasmid pPNAP03

3

Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-06

3

Yersinia pseudotuberculosis IP 32953 plasmid pYV

3

Yersinia pseudotuberculosis IP 31758 plasmid_153kb

3

Agrobacterium vitis S4 plasmid pAtS4b

3

Klebsiella pneumoniae 342 plasmid pKP187

3

Anabaena variabilis ATCC 29413 plasmid B

3

Dinoroseobacter shibae DFL 12 plasmid pDSHI01

3

Shewanella baltica OS195 plasmid pS19502

3

Escherichia coli APEC O1 plasmid pAPEC-O1-R

3

Shewanella baltica OS155 plasmid pSbal02

3

Novosphingobium aromaticivorans DSM 12444 plasmid pNL2

3

Novosphingobium aromaticivorans DSM 12444 plasmid pNL1

3

Bradyrhizobium sp. BTAi1 plasmid pBBta01

3

Nostoc sp. PCC 7120 plasmid pCC7120gamma

3

Dinoroseobacter shibae DFL 12 plasmid pDSHI05

3

Ruegeria sp. TM1040 plasmid unnamed

3

Kineococcus radiotolerans SRS30216 plasmid pKRAD01

3

Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3

3

Agrobacterium vitis S4 plasmid pTiS4

3

Bacillus cereus G9842 plasmid pG9842_140

3

Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081

3

Bacillus cereus Q1 plasmid pBc239

3

Cyanothece sp. PCC 7822 plasmid Cy782205

3

Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01

3

Borrelia burgdorferi B31 plasmid cp32-1

3

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8

3

Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B

3

Finegoldia magna ATCC 29328 plasmid pFMC

2

Dinoroseobacter shibae DFL 12 plasmid pDSHI04

2

Polaromonas naphthalenivorans CJ2 plasmid pPNAP05

2

Macrococcus caseolyticus JCSC5402 plasmid pMCCL1

2

Shewanella baltica OS223 plasmid pS22302

2

Shigella dysenteriae Sd197 plasmid pSD1_197

2

Yersinia pseudotuberculosis IP 31758 plasmid_59kb

2

Macrococcus caseolyticus JCSC5402 plasmid pMCCL2

2

Acinetobacter baumannii AYE plasmid p3ABAYE

2

Gordonia bronchialis DSM 43247 plasmid pGBRO01

2

Bacillus weihenstephanensis KBAB4 plasmid pBWB402

2

Borrelia burgdorferi B31 plasmid cp32-6

2

Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01

2

Nocardia farcinica IFM 10152 plasmid pNF2

2

Listeria innocua Clip11262 plasmid pLI100

2

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI01

2

Rhizobium etli CFN 42 plasmid p42c

2

Photobacterium profundum SS9 plasmid pPBPR1

2

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD07

2

Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5

2

Mesorhizobium sp. BNC1 plasmid 2

2

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA04

2

Rhodospirillum rubrum ATCC 11170 plasmid unnamed

2

Desulfotalea psychrophila LSv54 plasmid large

2

Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1

2

Cyanothece sp. PCC 8801 plasmid pP880103

2

Synechococcus sp. PCC 7002 plasmid pAQ7

2

Staphylococcus aureus subsp. aureus JH9 plasmid pSJH901

2

Deinococcus radiodurans R1 plasmid CP1

2

Yersinia pestis Angola plasmid new_pCD

2

Rickettsia felis URRWXCal2 plasmid pRF

2

Aeromonas salmonicida subsp. salmonicida A449 plasmid 5

2

Rhodobacter sphaeroides 2.4.1 plasmid D

2

Yersinia pestis Pestoides F plasmid MT

2

Nitrosomonas eutropha C91 plasmid1

2

Edwardsiella tarda EIB202 plasmid pEIB202

2

Yersinia pestis Nepal516 plasmid pMT

2

Desulfohalobium retbaense DSM 5692 plasmid pDRET01

2

Synechocystis sp. PCC 6803 plasmid pSYSA

2

Synechocystis sp. PCC 6803 plasmid pSYSM

2

Synechococcus sp. PCC 7002 plasmid pAQ6

2

Yersinia pestis biovar Microtus str. 91001 plasmid pCRY

2

Psychrobacter cryohalolentis K5 plasmid 1

2

Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74

2

Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_110

2

Aliivibrio salmonicida LFI1238 plasmid pVSAL54

2

Agrobacterium tumefaciens str. C58 plasmid Ti

2

Clostridium tetani E88 plasmid pE88

2

Yersinia pestis Pestoides F plasmid CD

2

Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp

2

Escherichia coli UTI89 plasmid pUTI89

2

Yersinia pestis Antiqua plasmid pMT

2

Yersinia pestis CO92 plasmid pMT1

2

Ammonifex degensii KC4 plasmid pADEG01

2

Escherichia coli E24377A plasmid pETEC_73

2

Roseobacter denitrificans plasmid pTB1

2

Synechococcus sp. PCC 7002 plasmid pAQ4

2

Nostoc punctiforme PCC 73102 plasmid pNPUN03

2

Arthrobacter sp. FB24 plasmid 1

2

Arthrobacter sp. FB24 plasmid 3

2

Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2

2

Burkholderia cenocepacia HI2424 plasmid 1

2

Cupriavidus metallidurans CH34 plasmid pMOL28

1

Escherichia coli E24377A plasmid pETEC_35

1

Polaromonas naphthalenivorans CJ2 plasmid pPNAP06

1

Thiomonas intermedia K12 plasmid pTINT02

1

Pseudomonas syringae pv. phaseolicola 1448A small plasmid

1

Polaromonas naphthalenivorans CJ2 plasmid pPNAP02

1

Rhodobacter capsulatus SB 1003 plasmid pRCB133

1

Halobacterium salinarum R1 plasmid PHS2

1

Natronomonas pharaonis DSM 2160 plasmid PL23

1

Sulfolobus islandicus L.D.8.5 plasmid pLD8501

1

Sulfolobus islandicus Y.N.15.51 plasmid pYN01

1

Gluconobacter oxydans 621H plasmid pGOX4

1

Vibrio vulnificus YJ016 plasmid pYJ016

1

Gluconacetobacter diazotrophicus PAl 5 plasmid pGDIA01

1

Burkholderia cenocepacia J2315 plasmid pBCJ2315

1

Campylobacter lari RM2100 megaplasmid pCL2100

1

Desulfobacterium autotrophicum HRM2 plasmid pHRM2a

1

Rickettsia felis URRWXCal2 plasmid pRFdelta

1

Aeromonas salmonicida salmonicida A449 plasmid pAsa2

1

Aeromonas salmonicida subsp. salmonicida A449 plasmid 4

1

Thermofilum pendens Hrk 5 plasmid pTPEN01

1

Candidatus Riesia pediculicola USDA plasmid pPAN

1

Rhodobacter sphaeroides 2.4.1 plasmid E

1

Rhodobacter sphaeroides 2.4.1 plasmid C

1

Desulfovibrio vulgaris str. Hildenborough plasmid pDV

1

Haloarcula marismortui ATCC 43049 plasmid pNG100

1

Methylobacterium nodulans ORS 2060 plasmid pMNOD07

1

Ralstonia pickettii 12J plasmid pRPIC01

1

Methanocaldococcus jannaschii DSM 2661 plasmid large ECE

1

Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND02

1

Ochrobactrum anthropi ATCC 49188 plasmid pOANT03

1

Ralstonia pickettii 12D plasmid pRp12D03

1

Roseobacter denitrificans plasmid pTB3

1

Ochrobactrum anthropi ATCC 49188 plasmid pOANT02

1

Methanothermobacter marburgensis str. Marburg plasmid pMTBMA4

1

Klebsiella pneumoniae 342 plasmid pKP91

1

Methylobacterium extorquens AM1 plasmid p3META1

1

Halobacterium salinarum R1 plasmid PHS4

1

Burkholderia vietnamiensis G4 plasmid pBVIE05

1

Haloferax volcanii DS2 plasmid pHV1

1

Methylobacterium chloromethanicum CM4 plasmid pMCHL02

1

Halobacterium salinarum R1 plasmid PHS1

1

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD05

1

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08

1

Ralstonia eutropha JMP134 plasmid 1

1

Bacillus cereus E33L plasmid pE33L54

1

Borrelia duttonii Ly plasmid pl40

1

Borrelia duttonii Ly plasmid pl42

1

Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC64

1

Cyanothece sp. PCC 8802 plasmid pP880204

1

Borrelia duttonii Ly plasmid pl36

1

Borrelia duttonii Ly plasmid pl32

1

Borrelia duttonii Ly plasmid pl23

1

Borrelia duttonii Ly plasmid pl23b

1

Borrelia duttonii Ly plasmid pl26

1

Borrelia duttonii Ly plasmid pl31

1

Agrobacterium radiobacter K84 plasmid pAgK84

1

Cyanothece sp. PCC 7424 plasmid pP742405

1

Synechococcus sp. PCC 7002 plasmid pAQ5

1

Coxiella burnetii RSA 331 plasmid QpH1

1

Sebaldella termitidis ATCC 33386 plasmid pSTERM01

1

Xylella fastidiosa M23 plasmid pXFAS01

1

Cyanothece sp. PCC 8801 plasmid pP880101

1

Cyanothece sp. ATCC 51142 plasmid A

1

Cyanothece sp. PCC 7424 plasmid pP742403

1

Xylella fastidiosa 9a5c plasmid pXF51

1

Cyanothece sp. ATCC 51142 plasmid C

1

Cyanothece sp. ATCC 51142 plasmid B

1

Borrelia recurrentis A1 plasmid pl53

1

Borrelia recurrentis A1 plasmid pl35

1

Borrelia burgdorferi B31 plasmid lp56

1

Borrelia burgdorferi plasmid cp26

1

Borrelia burgdorferi ZS7 plasmid ZS7_cp26

1

Borrelia burgdorferi ZS7 plasmid ZS7_cp32-1

1

Borrelia burgdorferi B31 plasmid lp28-2

1

Borrelia burgdorferi B31 plasmid lp17

1

Coxiella burnetii CbuK_Q154 plasmid pQpRS_K_Q154

1

Nitrosococcus oceani ATCC 19707 plasmid A

1

Borrelia burgdorferi B31 plasmid cp32-3

1

Borrelia burgdorferi B31 plasmid cp32-4

1

Borrelia burgdorferi ZS7 plasmid ZS7_cp32-12

1

Borrelia burgdorferi ZS7 plasmid ZS7_cp32-4

1

Borrelia afzelii PKo plasmid lp60-2

1

Nostoc sp. PCC 7120 plasmid pCC7120delta

1

Borrelia recurrentis A1 plasmid pl124

1

Borrelia recurrentis A1 plasmid pl33

1

Nostoc punctiforme PCC 73102 plasmid pNPUN04

1

Borrelia garinii PBi plasmid lp54

1

Borrelia burgdorferi ZS7 plasmid ZS7_lp17

1

Borrelia burgdorferi ZS7 plasmid ZS7_lp25

1

Borrelia burgdorferi ZS7 plasmid ZS7_lp28-4

1

Borrelia burgdorferi ZS7 plasmid ZS7_lp54

1

Aquifex aeolicus VF5 plasmid ece1

1

Butyrivibrio proteoclasticus B316 chromosome 2

1

Bacillus cereus ATCC 10987 plasmid pBc10987

1

Yersinia pestis CO92 plasmid pCD1

1

Kineococcus radiotolerans SRS30216 plasmid pKRAD02

1

Macrococcus caseolyticus JCSC5402 plasmid pMCCL4

1

Shewanella baltica OS155 plasmid pSbal01

1

Yersinia pestis KIM plasmid pMT-1

1

Bacillus cereus E33L plasmid pE33L9

1

Bacillus cereus E33L plasmid pE33L8

1

Tsukamurella paurometabola DSM 20162 plasmid pTpau01

1

Shewanella baltica OS195 plasmid pS19501

1

Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 plasmid pSSP1

1

Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-04

1

Bacteroides fragilis NCTC 9343 plasmid pBF9343

1

Yersinia pestis biovar Microtus str. 91001 plasmid pMT1

1

Spirosoma linguale DSM 74 plasmid pSLIN05

1

Spirosoma linguale DSM 74 plasmid pSLIN01

1

Yersinia pestis CO92 plasmid pPCP1

1

Bifidobacterium longum NCC2705 plasmid pBLO1

1

Staphylococcus epidermidis RP62A plasmid pSERP

1

Streptosporangium roseum DSM 43021 plasmid pSROS01

1

Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid pUSA03

1

Prosthecochloris aestuarii DSM 271 plasmid pPAES01

1

Shewanella baltica OS223 plasmid pS22301

1

Bacillus weihenstephanensis KBAB4 plasmid pBWB403

1

Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2

1

Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid unnamed

1

Clostridium botulinum B str. Eklund 17B plasmid pCLL

1

Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01

1

Clostridium botulinum F str. Langeland plasmid pCLI

1

Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1

1

Clostridium kluyveri DSM 555 plasmid pCKL555A

1

Arthrobacter aurescens TC1 plasmid TC2

1

Clostridium difficile 630 plasmid pCD630

1

Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 plasmid pSL476_91

1

Salmonella typhimurium LT2 plasmid pSLT

1

Lactococcus lactis subsp. cremoris SK11 plasmid 4

1

Lactobacillus plantarum WCFS1 plasmid pWCFS103

1

Lactobacillus casei ATCC 334 plasmid 1

1

Rhizobium etli CFN 42 plasmid p42a

1

Bacillus pseudofirmus OF4 plasmid pBpOF4-02

1

Corynebacterium glutamicum R plasmid pCGR1

1

Legionella pneumophila str. Lens plasmid pLPL

1

Rhodococcus erythropolis PR4 plasmid pREC1

1

Lactobacillus brevis ATCC 367 plasmid 1

1

Lactobacillus salivarius UCC118 plasmid pSF118-44

1

Thauera sp. MZ1T plasmid pTha01

1

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