Supplementary Table S1: Descriptive and diversity parameters of each simulated dataset. Page 2




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títuloSupplementary Table S1: Descriptive and diversity parameters of each simulated dataset. Page 2
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20

Chlamydophila pneumoniae CWL029

20

Borrelia hermsii DAH chromosome

20

Rhodobacter sphaeroides 2.4.1 chromosome 2

20

Azospirillum sp. B510 plasmid pAB510c

19

Borrelia recurrentis A1

19

Dehalococcoides sp. CBDB1 chromosome

19

Methylobacterium nodulans ORS 2060 plasmid pMNOD01

19

Mesoplasma florum L1

19

Burkholderia vietnamiensis G4 chromosome 3

18

Anaplasma marginale str. St. Maries

18

Mycoplasma hyopneumoniae 232

18

Vibrio cholerae O1 biovar eltor str. N16961 chromosome II

18

Mycoplasma pneumoniae M129

17

NC_001318 Borrelia burgdorferi B31 chromosome

17

Borrelia garinii PBi chromosome chromosome linear

17

Thermomicrobium roseum DSM 5159 plasmid unnamed

17

Candidatus Blochmannia pennsylvanicus str. BPEN

16

Eubacterium eligens ATCC 27750 plasmid unnamed

16

Azospirillum sp. B510 plasmid pAB510b

16

Candidatus Riesia pediculicola USDA chromosome

16

Vibrio fischeri MJ11 chromosome II

16

Mycoplasma genitalium G37

16

Borrelia afzelii PKo

16

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01

15

Neorickettsia sennetsu str. Miyayama

15

Deinococcus geothermalis DSM 11300 plasmid pDGEO01

15

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01

15

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10

15

Rhizobium etli CFN 42 plasmid p42f

15

Ralstonia eutropha JMP134 megaplasmid

15

Mycoplasma hyopneumoniae J

14

Candidatus Blochmannia floridanus chromosome

14

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502

14

Mycoplasma capricolum subsp. capricolum ATCC 27343

14

Mycoplasma pulmonis UAB CTIP

14

Cupriavidus necator megaplasmid pHG1

14

Agrobacterium vitis S4 plasmid pAtS4e

14

Rhizobium sp. NGR234 plasmid pNGR234a

14

Deinococcus radiodurans R1 chromosome 2

14

Phenylobacterium zucineum HLK1 plasmid unnamed

13

Anabaena variabilis ATCC 29413 plasmid A

13

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11

13

Halorubrum lacusprofundi ATCC 49239 chromosome 2

13

Arthrobacter chlorophenolicus A6 plasmid pACHL01

12

Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis chromosome

12

Rhizobium etli CFN 42 plasmid p42e

12

Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01

12

Mycoplasma agalactiae PG2

12

Azospirillum sp. B510 plasmid pAB510e

11

Mesorhizobium sp. BNC1 plasmid 1

11

Methylobacterium chloromethanicum CM4 plasmid pMCHL01

11

Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202

11

Haloferax volcanii DS2 plasmid pHV4

11

Rhodococcus erythropolis PR4 plasmid pREL1

11

Novosphingobium aromaticivorans DSM 12444 plasmid pNL2

11

Methylibium petroleiphilum PM1 plasmid RPME01

11

Azospirillum sp. B510 plasmid pAB510d

11

Mycoplasma synoviae 53

11

Blattabacterium sp. (Blattella germanica) str. Bge

11

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503

11

Methylobacterium nodulans ORS 2060 plasmid pMNOD02

11

Agrobacterium radiobacter K84 plasmid pAtK84c

10

Mycobacterium sp. KMS plasmid pMKMS01

10

Agrobacterium tumefaciens str. C58 plasmid At

10

Cupriavidus taiwanensis plasmid pRALTA

10

Paracoccus denitrificans PD1222 plasmid 1

10

Sphingomonas wittichii RW1 plasmid pSWIT01

10

Anabaena variabilis ATCC 29413 plasmid C

10

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid pNDAS01

10

Rhodococcus jostii RHA1 plasmid pRHL2

10

Haloarcula marismortui ATCC 43049 plasmid pNG700

9

Haloarcula marismortui ATCC 43049 chromosome II

9

Nostoc punctiforme PCC 73102 plasmid pNPUN01

9

Thermus thermophilus HB8 plasmid pTT27

9

Ureaplasma parvum serovar 3 str. ATCC 700970

9

Bradyrhizobium sp. BTAi1 plasmid pBBta01

9

Bacillus cereus E33L plasmid pE33L466

9

Xanthobacter autotrophicus Py2 plasmid pXAUT01

9

Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203

9

Azospirillum sp. B510 plasmid pAB510f

9

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02

9

Haloferax volcanii DS2 plasmid pHV3

8

Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01

8

Cyanothece sp. PCC 7822 plasmid Cy782202

8

Polaromonas sp. JS666 plasmid 2

8

Arthrobacter aurescens TC1 plasmid TC1

8

Agrobacterium vitis S4 plasmid pTiS4

8

Rhizobium etli CIAT 652 plasmid pA

8

Acaryochloris marina MBIC11017 plasmid pREB7

8

Novosphingobium aromaticivorans DSM 12444 plasmid pNL1

8

Ralstonia pickettii 12D plasmid pRp12D01

8

Bacillus pseudofirmus OF4 plasmid pBpOF4-01

8

Rhodococcus jostii RHA1 plasmid pRHL3

8

Bacillus cereus AH820 plasmid pAH820_272

8

Polaromonas naphthalenivorans CJ2 plasmid pPNAP01

8

Enterobacter sp. 638 plasmid pENTE01

8

Clostridium botulinum Ba4 str. 657 plasmid pCLJ

7

Cyanothece sp. PCC 7425 plasmid pP742501

7

Marinobacter aquaeolei VT8 plasmid pMAQU01

7

Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1

7

Cupriavidus metallidurans CH34 plasmid pMOL30

7

Burkholderia vietnamiensis G4 plasmid pBVIE01

7

Acaryochloris marina MBIC11017 plasmid pREB2

7

Bacillus cereus ATCC 10987 plasmid pBc10987

7

Shigella flexneri 2a str. 301 plasmid pCP301

7

Cyanothece sp. PCC 7425 plasmid pP742502

7

Meiothermus silvanus DSM 9946 plasmid pMESIL01

6

Mesorhizobium loti MAFF303099 plasmid pMLa

6

Ochrobactrum anthropi ATCC 49188 plasmid pOANT01

6

Nocardioides sp. JS614 plasmid pNOCA01

6

Lactobacillus salivarius UCC118 plasmid pMP118

6

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505

6

Nostoc punctiforme PCC 73102 plasmid pNPUN02

6

Borrelia garinii pBi plasmid

6

Deinococcus geothermalis DSM 11300 plasmid pDGEO02

6

Cyanothece sp. PCC 7424 plasmid pP742401

6

Escherichia coli APEC O1 plasmid pAPEC-O1-R

6

Arthrobacter aurescens TC1 plasmid TC2

6

Agrobacterium tumefaciens str. C58 plasmid Ti

6

Cyanothece sp. PCC 7822 plasmid Cy782203

6

Pseudoalteromonas haloplanktis TAC125 chromosome II

6

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9

6

Candidatus Sulcia muelleri GWSS

6

Nostoc sp. PCC 7120 plasmid pCC7120alpha

6

Butyrivibrio proteoclasticus B316 plasmid pCY360

6

Nitrobacter hamburgensis X14 plasmid 1

6

Desulfovibrio vulgaris str. Hildenborough plasmid pDV

5

Rhizobium etli CFN 42 plasmid p42b

5

Burkholderia vietnamiensis G4 plasmid pBVIE02

5

Rhizobium etli CFN 42 symbiotic plasmid p42d

5

Candidatus Carsonella ruddii PV

5

Bacillus weihenstephanensis KBAB4 plasmid pBWB401

5

Bacillus cereus G9842 plasmid pG9842_209

5

Acaryochloris marina MBIC11017 plasmid pREB3

5

Arthrobacter sp. FB24 plasmid 2

5

Klebsiella pneumoniae 342 plasmid pKP187

5

Azoarcus sp. EbN1 plasmid 1

5

Mycobacterium ulcerans AGY99 plasmid pMUM001

5

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02

5

Spirosoma linguale DSM 74 plasmid pSLIN02

5

Polaromonas sp. JS666 plasmid 1

5

Rhizobium etli CIAT 652 plasmid pB

5

Borrelia duttonii Ly plasmid pl70

5

Synechocystis sp. PCC 6803 plasmid pSYSM

5

Nostoc sp. PCC 7120 plasmid pCC7120beta

5

Acaryochloris marina MBIC11017 plasmid pREB1

5

Pseudomonas syringae pv. phaseolicola 1448A large plasmid

5

Nitrobacter hamburgensis X14 plasmid 2

5

Cyanothece sp. ATCC 51142 chromosome chromosome linear

5

Agrobacterium vitis S4 plasmid pAtS4c

5

Agrobacterium radiobacter K84 plasmid pAtK84b

5

Roseobacter denitrificans plasmid pTB1

4

Yersinia pestis CO92 plasmid pMT1

4

Dinoroseobacter shibae DFL 12 plasmid pDSHI01

4

Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM

4

Arthrobacter sp. FB24 plasmid 1

4

Geobacter lovleyi SZ plasmid pGLOV01

4

Escherichia coli E24377A plasmid pETEC_74

4

Clostridium botulinum A3 str. Loch Maree plasmid pCLK

4

Meiothermus silvanus DSM 9946 plasmid pMESIL02

4

Ralstonia pickettii 12D plasmid pRp12D02

4

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8

4

Halomicrobium mukohataei DSM 12286 plasmid pHmuk01

4

Synechocystis sp. PCC 6803 plasmid pSYSX

4

Ochrobactrum anthropi ATCC 49188 plasmid pOANT03

4

Haloferax volcanii DS2 plasmid pHV1

4

Sebaldella termitidis ATCC 33386 plasmid pSTERM01

4

Bacillus cereus Q1 plasmid pBc239

4

Methanosarcina barkeri str. fusaro plasmid 1

4

Sphingomonas wittichii RW1 plasmid pSWIT02

4

Yersinia pseudotuberculosis IP 32953 plasmid pYV

4

Bacillus cereus AH187 plasmid pAH187_270

4

Vibrio fischeri MJ11 plasmid pMJ100

4

Burkholderia vietnamiensis G4 plasmid pBVIE04

4

Burkholderia vietnamiensis G4 plasmid pBVIE03

4

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI01

4

Rhizobium etli CFN 42 plasmid p42c

4

Borrelia afzelii PKo plasmid lp60

4

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA04

4

Caulobacter sp. K31 plasmid pCAUL01

4

Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01

4

Clostridium tetani E88 plasmid pE88

4

Rhodococcus erythropolis PR4 plasmid pREC1

4

Synechococcus sp. PCC 7002 plasmid pAQ7

4

Synechococcus sp. PCC 7002 plasmid pAQ6

4

Halobacterium salinarum R1 plasmid PHS3

4

Thermus thermophilus HB27 plasmid pTT27

3

Mycobacterium sp. MCS plasmid1

3

Dinoroseobacter shibae DFL 12 plasmid pDSHI04

3

Marinobacter aquaeolei VT8 plasmid pMAQU02

3

Mycobacterium sp. KMS plasmid pMKMS02

3

Acaryochloris marina MBIC11017 plasmid pREB6

3

Leptospira interrogans serovar Lai str. 56601 chromosome chromosome II

3

Pseudomonas fluorescens SBW25 plasmid pQBR103

3

Aeromonas salmonicida subsp. salmonicida A449 plasmid 4

3

Macrococcus caseolyticus JCSC5402 plasmid pMCCL2

3

Methylobacterium nodulans ORS 2060 plasmid pMNOD03

3

Polaromonas naphthalenivorans CJ2 plasmid pPNAP04

3

Polaromonas naphthalenivorans CJ2 plasmid pPNAP05

3

Polaromonas naphthalenivorans CJ2 plasmid pPNAP02

3

Nocardia farcinica IFM 10152 plasmid pNF2

3

Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND02

3

Bacillus cereus G9842 plasmid pG9842_140

3

Nostoc punctiforme PCC 73102 plasmid pNPUN03

3

Dinoroseobacter shibae DFL 12 plasmid pDSHI05

3

Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01

3

Azoarcus sp. EbN1 plasmid 2

3

Burkholderia phytofirmans PsJN plasmid pBPHYT01

3

Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2

3

Nitrosomonas eutropha C91 plasmid2

3

Yersinia pseudotuberculosis IP 31758 plasmid_59kb

3

Shigella sonnei Ss046 plasmid pSS_046

3

Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204

3

Kineococcus radiotolerans SRS30216 plasmid pKRAD01

3

Burkholderia multivorans ATCC 17616 plasmid pTGL1

3

Acaryochloris marina MBIC11017 plasmid pREB5

3

Rhodobacter capsulatus SB 1003 plasmid pRCB133

3

Yersinia pestis KIM plasmid pMT-1

3

Spirosoma linguale DSM 74 plasmid pSLIN01

3

Yersinia pestis biovar Microtus str. 91001 plasmid pMT1

3

Yersinia pestis Angola plasmid pMT-pPCP

3

Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504

3

Borrelia duttonii Ly plasmid pl40

3

Burkholderia vietnamiensis G4 plasmid pBVIE05

3

Yersinia pestis CO92 plasmid pCD1

3

Bacillus pseudofirmus OF4 plasmid pBpOF4-02

3

Desulfovibrio vulgaris subsp. vulgaris DP4 plasmid pDVUL01

3

Ralstonia pickettii 12J plasmid pRPIC01

3

Rhodobacter sphaeroides 2.4.1 plasmid D

2

Salinibacter ruber DSM 13855 plasmid pSR35

2

Thiomonas intermedia K12 plasmid pTINT02

2

Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03

2

Cyanothece sp. PCC 8802 plasmid pP880201

2

Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p

2

Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5

2

Cyanothece sp. PCC 7424 plasmid pP742403

2

Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN4

2

Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A

2

Rhodothermus marinus DSM 4252 plasmid pRMAR01

2

Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_110

2

Gordonia bronchialis DSM 43247 plasmid pGBRO01

2

Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081

2

Escherichia coli E24377A plasmid pETEC_73

2

Yersinia pestis Pestoides F plasmid MT

2

Yersinia pestis Pestoides F plasmid CD

2

Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01

2

Cyanothece sp. PCC 8801 plasmid pP880102

2

Yersinia pseudotuberculosis IP 31758 plasmid_153kb

2

Shigella boydii Sb227 plasmid pSB4_227

2

Nitrobacter hamburgensis X14 plasmid 3

2

Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU02

2

Escherichia coli UTI89 plasmid pUTI89

2

Thauera sp. MZ1T plasmid pTha01

2

Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 plasmid pSPCV

2

Escherichia coli E24377A plasmid pETEC_80

2

Shigella dysenteriae Sd197 plasmid pSD1_197

2

Cyanothece sp. PCC 7424 plasmid pP742402

2

Shewanella baltica OS223 plasmid pS22302

2

Borrelia recurrentis A1 plasmid pl124

2

Borrelia recurrentis A1 plasmid pl37

2

Sinorhizobium medicae WSM419 plasmid pSMED03

2

Natronomonas pharaonis DSM 2160 plasmid PL131

2

Clostridium kluyveri DSM 555 plasmid pCKL555A

2

Nostoc punctiforme PCC 73102 plasmid pNPUN04

2

Agrobacterium vitis S4 plasmid pAtS4b

2

Shewanella baltica OS185 plasmid pS18501

2

Nostoc sp. PCC 7120 plasmid pCC7120epsilon

2

Nostoc sp. PCC 7120 plasmid pCC7120gamma

2

Agrobacterium vitis S4 plasmid pAtS4a

2

Bacillus weihenstephanensis KBAB4 plasmid pBWB402

2

Ralstonia eutropha JMP134 plasmid 1

2

Borrelia burgdorferi ZS7 plasmid ZS7_lp25

2

Shewanella baltica OS155 plasmid pSbal01

2

Caulobacter sp. K31 plasmid pCAUL02

2

Clostridium perfringens str. 13 plasmid pCP13

2

Clostridium botulinum B str. Eklund 17B plasmid pCLL

2

Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7

2

Borrelia burgdorferi B31 plasmid lp38

2

Borrelia burgdorferi B31 plasmid lp56

2

Borrelia burgdorferi ZS7 plasmid ZS7_lp17

2

Borrelia burgdorferi ZS7 plasmid ZS7_cp32-3+10

2

Borrelia burgdorferi ZS7 plasmid ZS7_cp32-1

2

Sulfolobus islandicus Y.N.15.51 plasmid pYN01

2

Rhizobium etli CFN 42 plasmid p42a

2

Borrelia duttonii Ly plasmid pl165

2

Aeromonas salmonicida subsp. salmonicida A449 plasmid 5

2

Pelobacter propionicus DSM 2379 plasmid pPRO1

2

Finegoldia magna ATCC 29328 plasmid pFMC

2

Butyrivibrio proteoclasticus B316 chromosome 2

2

Arthrobacter sp. FB24 plasmid 3

2

Vibrio vulnificus YJ016 plasmid pYJ016

2

Acaryochloris marina MBIC11017 plasmid pREB8

2

Halobacterium salinarum R1 plasmid PHS1

2

Polaromonas naphthalenivorans CJ2 plasmid pPNAP03

2

Butyrivibrio proteoclasticus B316 plasmid pCY186

2

Acidovorax sp. JS42 plasmid pAOVO01

2

Acidovorax sp. JS42 plasmid pAOVO02

2

Desulfotalea psychrophila LSv54 plasmid large

2

Deinococcus radiodurans R1 plasmid MP1

2

Cyanothece sp. PCC 7822 plasmid Cy782205

2

Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 plasmid pSSP1

2

Jannaschia sp. CCS1 plasmid1

1

Campylobacter lari RM2100 megaplasmid pCL2100

1

Gluconobacter oxydans 621H plasmid pGOX1

1

Gluconobacter oxydans 621H plasmid pGOX2

1

Rhodospirillum rubrum ATCC 11170 plasmid unnamed

1

Ruegeria sp. TM1040 plasmid unnamed

1

Sphingopyxis alaskensis RB2256 F plasmid

1

Burkholderia multivorans ATCC 17616 plasmid pBMUL01

1

Methanocaldococcus jannaschii DSM 2661 plasmid large ECE

1

Thiomonas intermedia K12 plasmid pTINT01

1

Halobacterium salinarum R1 plasmid PHS2

1

Nitrosospira multiformis ATCC 25196 plasmid 3

1

Dinoroseobacter shibae DFL 12 plasmid pDSHI02

1

Helicobacter pylori HPAG1 plasmid pHPAG1

1

Nitrosospira multiformis ATCC 25196 plasmid 2

1

Legionella pneumophila str. Lens plasmid pLPL

1

Haloarcula marismortui ATCC 43049 plasmid pNG400

1

Haloarcula marismortui ATCC 43049 plasmid pNG500

1

Haloarcula marismortui ATCC 43049 plasmid pNG600

1

Rhodoferax ferrireducens T118 plasmid1

1

Haloarcula marismortui ATCC 43049 plasmid pNG300

1

Haloarcula marismortui ATCC 43049 plasmid pNG200

1

Sulfolobus islandicus L.D.8.5 plasmid pLD8501

1

Burkholderia cenocepacia HI2424 plasmid 1

1

Haloferax volcanii DS2 plasmid pHV2

1

Desulfobacterium autotrophicum HRM2 plasmid pHRM2a

1

Gluconacetobacter diazotrophicus PAl 5 plasmid pGDIA01

1

Dinoroseobacter shibae DFL 12 plasmid pDSHI03

1

Shewanella baltica OS155 plasmid pSbal03

1

Acinetobacter baumannii ATCC 17978 plasmid pAB1

1

Shewanella baltica OS155 plasmid pSbal02

1

Legionella pneumophila str. Paris plasmid pLPP

1

Shewanella baltica OS195 plasmid pS19501

1

Psychrobacter cryohalolentis K5 plasmid 1

1

Burkholderia cenocepacia J2315 plasmid pBCJ2315

1

Shewanella baltica OS195 plasmid pS19502

1

Haloquadratum walsbyi DSM 16790 plasmid PL47

1

Cupriavidus metallidurans CH34 plasmid pMOL28

1

Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid pUSA03

1

Lactobacillus brevis ATCC 367 plasmid 2

1

Borrelia burgdorferi plasmid cp26

1

Borrelia burgdorferi ZS7 plasmid ZS7_lp28-3

1

Borrelia burgdorferi ZS7 plasmid ZS7_lp28-4

1

Borrelia burgdorferi ZS7 plasmid ZS7_lp36

1

Borrelia burgdorferi B31 plasmid lp5

1

Borrelia burgdorferi B31 plasmid lp36

1

Borrelia burgdorferi B31 plasmid cp32-3

1

Borrelia burgdorferi B31 plasmid cp32-6

1

Borrelia burgdorferi B31 plasmid lp21

1

Borrelia burgdorferi B31 plasmid lp28-4

1

Lactobacillus salivarius UCC118 plasmid pSF118-44

1

Borrelia afzelii PKo plasmid cp27

1

Borrelia duttonii Ly plasmid pl26

1

Borrelia duttonii Ly plasmid pl23

1

Borrelia duttonii Ly plasmid pl28

1

Borrelia duttonii Ly plasmid pl35

1

Borrelia duttonii Ly plasmid pl42

1

Borrelia duttonii Ly plasmid pl11

1

Borrelia recurrentis A1 plasmid pl33

1

Borrelia afzelii PKo plasmid cp30

1

Borrelia afzelii PKo plasmid lp25

1

Borrelia afzelii PKo plasmid lp34

1

Borrelia recurrentis A1 plasmid pl23

1

Lactococcus lactis subsp. cremoris SK11 plasmid 1

1

Planctomyces limnophilus DSM 3776 plasmid pPLIM01

1

Agrobacterium radiobacter K84 plasmid pAgK84

1

Cyanothece sp. PCC 8802 plasmid pP880202

1

Cyanothece sp. PCC 7822 plasmid Cy782204

1

Cyanothece sp. PCC 7822 plasmid Cy782206

1

Synechocystis sp. PCC 6803 plasmid pSYSA

1

Caldicelulosiruptor becscii DSM 6725 plasmid pATHE01

1

Campylobacter concisus 13826 plasmid pCCON16

1

Synechococcus sp. PCC 7002 plasmid pAQ4

1

Synechococcus elongatus PCC 7942 plasmid 1

1

Cyanothece sp. PCC 8801 plasmid pP880101

1

Cyanothece sp. ATCC 51142 plasmid A

1

Nostoc sp. PCC 7120 plasmid pCC7120delta

1

Anabaena variabilis ATCC 29413 plasmid B

1

Leuconostoc citreum KM20 plasmid pLCK1

1

Chlamydophila caviae GPIC plasmid pCpGP1

1

Lactococcus lactis subsp. cremoris SK11 plasmid 3

1

Photobacterium profundum SS9 plasmid pPBPR1

1

Leuconostoc citreum KM20 plasmid pLCK2

1

Leuconostoc citreum KM20 plasmid pLCK4

1

Clostridium acetobutylicum ATCC 824 plasmid pSOL1

1

Clostridium botulinum B1 str. Okra plasmid pCLD

1

Acaryochloris marina MBIC11017 plasmid pREB4

1

Anaerococcus prevotii DSM 20548 plasmid pAPRE01

1

Vibrio fischeri ES114 plasmid pES100

1

Ochrobactrum anthropi ATCC 49188 plasmid pOANT02

1

Mesorhizobium sp. BNC1 plasmid 2

1

Yersinia pestis Antiqua plasmid pMT

1

Tsukamurella paurometabola DSM 20162 plasmid pTpau01

1

Salmonella typhimurium LT2 plasmid pSLT

1

Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74

1

Yersinia pestis Nepal516 plasmid pMT

1

Yersinia pestis Nepal516 plasmid pPCP

1

Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp

1

Bartonella tribocorum CIP 105476 plasmid pBT01

1

Photorhabdus asymbiotica plasmid pPAU1

1

Prosthecochloris aestuarii DSM 271 plasmid pPAES01

1

Mesorhizobium sp. BNC1 plasmid 3

1

Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSN254

1

Rhodobacter sphaeroides 2.4.1 plasmid C

1

Rhodobacter sphaeroides 2.4.1 plasmid B

1

Spirosoma linguale DSM 74 plasmid pSLIN07

1

Nitrosococcus halophilus Nc4 plasmid pNHAL01

1

Spirosoma linguale DSM 74 plasmid pSLIN04

1

Rhodobacter sphaeroides 2.4.1 plasmid A

1

Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC33

1

Mesorhizobium loti MAFF303099 plasmid pMLb

1

Streptosporangium roseum DSM 43021 plasmid pSROS01

1

Bacteroides fragilis NCTC 9343 plasmid pBF9343

1

Xylella fastidiosa 9a5c plasmid pXF51

1

Corynebacterium glutamicum R plasmid pCGR1

1

Nocardia farcinica IFM 10152 plasmid pNF1

1

Macrococcus caseolyticus JCSC5402 plasmid pMCCL5

1

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD06

1

Arthrobacter chlorophenolicus A6 plasmid pACHL02

1

Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-05

1

Methylobacterium chloromethanicum CM4 plasmid pMCHL02

1

Methylobacterium radiotolerans JCM 2831 plasmid pMRAD04

1

Methylobacterium extorquens AM1 plasmid p1META1

1

Ochrobactrum anthropi ATCC 49188 plasmid pOANT04

1

Thermus thermophilus HB8 plasmid pTT8

1

Bacillus cereus AH187 plasmid pAH187_45

1

Bacillus cereus Q1 plasmid pBc53

1

Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1

1

Aeromonas salmonicida salmonicida A449 plasmid pAsa3

1

Staphylococcus aureus subsp. aureus JH9 plasmid pSJH901

1

Methylobacterium nodulans ORS 2060 plasmid pMNOD04

1

Staphylococcus aureus subsp. aureus N315 plasmid pN315

1

Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3

1

Staphylococcus aureus subsp. aureus JH1 plasmid pSJH101

1

Methylobacterium populi BJ001 plasmid pMPOP02

1

Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2

1

Staphylococcus epidermidis RP62A plasmid pSERP

1

Staphylococcus aureus subsp. aureus USA300_TCH1516 plasmid pUSA300HOUMR

1

Synechococcus sp. PCC 7002 plasmid pAQ5

1

Spirosoma linguale DSM 74 plasmid pSLIN03

1

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